Variant report

Variant	rs17677155
Chromosome Location	chr2:210065783-210065784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10497924	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10932294	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10932296	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11683323	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11690484	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12053028	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12472096	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12473625	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1374341	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1374342	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1374343	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1439728	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1439731	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1446599	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1446613	0.90[ASN][1000 genomes]
rs1446614	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1446615	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1446616	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1446617	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17690185	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17741199	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1900313	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1900314	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1900320	0.90[ASN][1000 genomes]
rs1900321	0.90[ASN][1000 genomes]
rs1900322	0.90[ASN][1000 genomes]
rs2028895	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2043918	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197590	0.90[ASN][1000 genomes]
rs2218135	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2365309	0.90[ASN][1000 genomes]
rs35204978	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4673455	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55689700	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55732044	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56060601	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58699784	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72998586	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73071805	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7424961	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7557340	0.87[ASN][1000 genomes]
rs7563196	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7569915	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7580881	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7588935	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7596452	0.86[ASN][1000 genomes]
rs7596453	0.86[ASN][1000 genomes]
rs7600789	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7602789	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs991257	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv460059	chr2:210058383-210215272	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv584308	chr2:210058383-210215272	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1006506	chr2:210063871-210212039	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv536134	chr2:210063871-210212039	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17677155	EEF1B2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210065200-210065800	Enhancers	H9 Cell Line	embryonic stem cell
2	chr2:210065200-210067000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:210065200-210067200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:210065400-210066000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:210065400-210066000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:210065600-210066000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:210065600-210066000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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