Variant report
Variant | rs17677155 |
---|---|
Chromosome Location | chr2:210065783-210065784 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10497924 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10932294 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10932296 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11683323 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11690484 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12053028 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12472096 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12473625 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1374341 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1374342 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1374343 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1439728 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1439731 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1446599 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1446613 | 0.90[ASN][1000 genomes] |
rs1446614 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1446615 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1446616 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1446617 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs17690185 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs17741199 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1900313 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1900314 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1900320 | 0.90[ASN][1000 genomes] |
rs1900321 | 0.90[ASN][1000 genomes] |
rs1900322 | 0.90[ASN][1000 genomes] |
rs2028895 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2043918 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2197590 | 0.90[ASN][1000 genomes] |
rs2218135 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2365309 | 0.90[ASN][1000 genomes] |
rs35204978 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4673455 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs55689700 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs55732044 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs56060601 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs58699784 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs72998586 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73071805 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7424961 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7557340 | 0.87[ASN][1000 genomes] |
rs7563196 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7569915 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7580881 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7588935 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7596452 | 0.86[ASN][1000 genomes] |
rs7596453 | 0.86[ASN][1000 genomes] |
rs7600789 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7602789 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs991257 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv875761 | chr2:209912108-210222004 | Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv1000214 | chr2:209987607-210308626 | Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv536133 | chr2:209987607-210308626 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv460059 | chr2:210058383-210215272 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv584308 | chr2:210058383-210215272 | Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv1006506 | chr2:210063871-210212039 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv536134 | chr2:210063871-210212039 | Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv1003864 | chr2:210063871-210308626 | Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:210065200-210065800 | Enhancers | H9 Cell Line | embryonic stem cell |
2 | chr2:210065200-210067000 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
3 | chr2:210065200-210067200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
4 | chr2:210065400-210066000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
5 | chr2:210065400-210066000 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
6 | chr2:210065600-210066000 | Enhancers | H1 Cell Line | embryonic stem cell |
7 | chr2:210065600-210066000 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |