Variant report
| Variant | rs17678185 |
|---|---|
| Chromosome Location | chr8:9728809-9728810 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:9727833..9729706-chr8:9742028..9743799,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10086851 | 0.80[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12543209 | 0.84[CEU][hapmap] |
| rs1567833 | 0.93[ASN][1000 genomes] |
| rs4532598 | 0.83[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs531564 | 0.83[CEU][hapmap] |
| rs62491301 | 0.80[AMR][1000 genomes] |
| rs7004588 | 0.81[AMR][1000 genomes] |
| rs7006923 | 0.84[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530864 | chr8:9097498-9914548 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv520485 | chr8:9718278-9729939 | Flanking Active TSS Weak transcription Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
