Variant report

Variant	rs17681969
Chromosome Location	chr10:27734691-27734692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27733427..27735475-chr10:27790214..27792243,2	MCF-7	breast:
2	chr10:27725869..27728262-chr10:27734459..27736810,2	K562	blood:
3	chr10:27734555..27735404-chr10:27847198..27848051,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10508725	0.81[ASN][1000 genomes]
rs11015783	1.00[ASN][1000 genomes]
rs11814298	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11814433	0.91[ASN][1000 genomes]
rs12413104	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414736	1.00[ASN][1000 genomes]
rs12415979	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs12772577	0.91[ASN][1000 genomes]
rs12777582	0.91[ASN][1000 genomes]
rs17749271	1.00[ASN][1000 genomes]
rs17749397	0.91[ASN][1000 genomes]
rs2020155	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368231	0.91[ASN][1000 genomes]
rs2642274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2992007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs34354872	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34467586	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34773871	1.00[ASN][1000 genomes]
rs34978206	0.91[ASN][1000 genomes]
rs35224308	0.91[ASN][1000 genomes]
rs35590474	0.91[ASN][1000 genomes]
rs35599449	0.91[ASN][1000 genomes]
rs35673366	1.00[ASN][1000 genomes]
rs3847381	1.00[ASN][1000 genomes]
rs3904627	1.00[ASN][1000 genomes]
rs4749249	0.91[ASN][1000 genomes]
rs56108042	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594549	0.91[ASN][1000 genomes]
rs616550	0.83[ASN][1000 genomes]
rs620664	0.83[ASN][1000 genomes]
rs625433	0.91[ASN][1000 genomes]
rs638324	0.83[ASN][1000 genomes]
rs661882	0.91[ASN][1000 genomes]
rs67199203	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68016309	1.00[ASN][1000 genomes]
rs7067807	1.00[ASN][1000 genomes]
rs7069133	1.00[ASN][1000 genomes]
rs7090220	0.91[ASN][1000 genomes]
rs7095624	1.00[ASN][1000 genomes]
rs717287	0.91[ASN][1000 genomes]
rs765700	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9732977	0.91[ASN][1000 genomes]
rs9804355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv430148	chr10:27600380-27734720	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv430149	chr10:27602959-27734720	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17681969	MASTL	cis	parietal	SCAN
rs17681969	LOC387646	cis	parietal	SCAN
rs17681969	PTCHD3	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27730000-27734800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27730200-27735200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:27734600-27735200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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