Variant report

Variant	rs17684050
Chromosome Location	chr8:119855817-119855818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55880602	0.82[EUR][1000 genomes]
rs59708383	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119850400-119856200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:119854800-119857200	Enhancers	Hela-S3	cervix
3	chr8:119855000-119856800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:119855000-119856800	Enhancers	NHLF	lung
5	chr8:119855000-119857000	Enhancers	HMEC	breast
6	chr8:119855200-119857000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:119855400-119856200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:119855400-119856400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:119855400-119856800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:119855400-119856800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:119855400-119856800	Enhancers	NHEK	skin
12	chr8:119855400-119857000	Enhancers	NH-A	brain
13	chr8:119855600-119856000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:119855600-119856800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:119855600-119856800	Enhancers	HSMM	muscle
16	chr8:119855600-119856800	Enhancers	Osteobl	bone
17	chr8:119855600-119857000	Enhancers	NHDF-Ad	bronchial
18	chr8:119855800-119856600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:119855800-119856600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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