Variant report

Variant	rs17685416
Chromosome Location	chr8:2113792-2113793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10107796	0.96[EUR][1000 genomes]
rs11774799	0.85[AMR][1000 genomes]
rs11990285	0.88[EUR][1000 genomes]
rs17064796	0.90[EUR][1000 genomes]
rs17064804	0.96[EUR][1000 genomes]
rs17064827	0.88[EUR][1000 genomes]
rs17752630	1.00[EUR][1000 genomes]
rs7002435	0.91[EUR][1000 genomes]
rs7846356	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2094000-2122400	Weak transcription	Right Ventricle	heart
2	chr8:2101000-2118000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:2104600-2122200	Weak transcription	Fetal Thymus	thymus
4	chr8:2110200-2116600	Weak transcription	Left Ventricle	heart
5	chr8:2113600-2113800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr8:2113600-2114200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:2113600-2114200	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links