Variant report

Variant	rs1769055
Chromosome Location	chr1:192939972-192939973
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192935154..192937463-chr1:192938580..192941268,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1339589	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1339592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1578163	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1612628	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1618583	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1769056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1769057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1769058	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1769059	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1769061	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1769068	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1769070	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1769071	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1770923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486494	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2486495	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2486498	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2487283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2487289	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59189492	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6661948	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73068182	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73068192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7546076	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7553594	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs842784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842789	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842799	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842800	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842801	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842805	0.89[YRI][hapmap]
rs842806	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842808	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842809	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842810	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842811	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs842813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs863600	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs866380	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs866381	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs946556	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv999499	chr1:192909529-192998421	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv535252	chr1:192909529-192998421	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192922400-192941000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:192937000-192963400	Weak transcription	Aorta	Aorta
3	chr1:192937800-192940400	Weak transcription	HSMMtube	muscle
4	chr1:192937800-192946600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:192938000-192943000	Weak transcription	Fetal Intestine Large	intestine
6	chr1:192938000-192943600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:192938000-192943800	Weak transcription	Pancreas	Pancrea
8	chr1:192938000-192972800	Weak transcription	Psoas Muscle	Psoas
9	chr1:192938200-192942800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:192938400-192942200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:192938400-192944800	Weak transcription	K562	blood
12	chr1:192938800-192943000	Weak transcription	Fetal Intestine Small	intestine
13	chr1:192938800-192943800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:192939000-192942400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:192939200-192940800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:192939200-192942200	Weak transcription	Osteobl	bone
17	chr1:192939200-192942600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:192939200-192946400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:192939800-192940600	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:192939800-192940600	Enhancers	Small Intestine	intestine

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