Variant report

Variant	rs176907
Chromosome Location	chr14:78082439-78082440
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:77786606..77788826-chr14:78082183..78084255,2	K562	blood:
2	chr14:77782973..77788435-chr14:78081530..78084931,5	MCF-7	breast:
3	chr14:78069297..78071425-chr14:78081435..78083020,2	K562	blood:
4	chr14:77925306..77928562-chr14:78081993..78085089,3	MCF-7	breast:
5	chr14:78081876..78084095-chr14:78119324..78121053,2	MCF-7	breast:
6	chr14:77922506..77924938-chr14:78082363..78084357,2	MCF-7	breast:
7	chr14:78081719..78084170-chr17:57917300..57920054,2	MCF-7	breast:
8	chr14:78080102..78083060-chr14:78184904..78187965,3	K562	blood:
9	chr14:78064657..78067063-chr14:78079647..78083000,3	MCF-7	breast:
10	chr14:78068423..78071899-chr14:78079739..78082860,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100577	Chromatin interaction
ENSG00000258668	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000151445	Chromatin interaction
ENSG00000009830	Chromatin interaction
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10139852	0.81[ASN][1000 genomes]
rs10140195	0.92[ASN][1000 genomes]
rs10148189	0.89[ASN][1000 genomes]
rs10148244	0.83[ASN][1000 genomes]
rs10162458	0.84[ASN][1000 genomes]
rs11626892	0.84[ASN][1000 genomes]
rs12432164	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12587835	0.92[ASN][1000 genomes]
rs13379058	0.93[ASN][1000 genomes]
rs176897	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs176898	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs176901	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs176903	0.98[ASN][1000 genomes]
rs1990806	0.98[ASN][1000 genomes]
rs2267754	0.80[ASN][1000 genomes]
rs2299922	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2299927	0.91[ASN][1000 genomes]
rs2299929	0.98[ASN][1000 genomes]
rs28460392	0.98[ASN][1000 genomes]
rs28472502	0.95[ASN][1000 genomes]
rs58598324	0.92[ASN][1000 genomes]
rs61990852	0.82[ASN][1000 genomes]
rs7157536	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7158771	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8018203	0.83[ASN][1000 genomes]
rs8021376	0.80[ASN][1000 genomes]
rs9944097	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1051554	chr14:78004196-78122980	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78080200-78083800	Active TSS	GM12878-XiMat	blood
2	chr14:78081200-78082600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr14:78081200-78082800	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr14:78081200-78083600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:78081400-78082600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr14:78081400-78082600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr14:78081400-78082600	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr14:78081400-78082600	Active TSS	Stomach Mucosa	stomach
9	chr14:78081400-78082600	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr14:78081400-78083000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr14:78081400-78083000	Active TSS	K562	blood
12	chr14:78081400-78083200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:78081400-78083600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:78081400-78083600	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr14:78081400-78083600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:78081400-78083600	Active TSS	Ovary	ovary
17	chr14:78081400-78083600	Active TSS	Right Atrium	heart
18	chr14:78081400-78083600	Active TSS	HSMMtube	muscle
19	chr14:78081400-78083600	Active TSS	NHLF	lung
20	chr14:78081400-78083800	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr14:78081400-78083800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:78081400-78083800	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr14:78081600-78082600	Flanking Active TSS	Liver	Liver
24	chr14:78081600-78083000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr14:78081600-78083200	Active TSS	H9 Cell Line	embryonic stem cell
26	chr14:78081600-78083200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr14:78081600-78083200	Active TSS	Left Ventricle	heart
28	chr14:78081600-78083200	Active TSS	Lung	lung
29	chr14:78081600-78083400	Active TSS	Esophagus	oesophagus
30	chr14:78081600-78083400	Active TSS	Fetal Muscle Trunk	muscle
31	chr14:78081600-78083400	Active TSS	Monocytes-CD14+_RO01746	blood
32	chr14:78081600-78083400	Active TSS	NHDF-Ad	bronchial
33	chr14:78081600-78083600	Active TSS	Muscle Satellite Cultured Cells	--
34	chr14:78081600-78083600	Active TSS	Fetal Kidney	kidney
35	chr14:78081600-78083600	Active TSS	Psoas Muscle	Psoas
36	chr14:78081600-78083600	Active TSS	Right Ventricle	heart
37	chr14:78081600-78083600	Active TSS	A549	lung
38	chr14:78081800-78082600	Bivalent/Poised TSS	HepG2	liver
39	chr14:78081800-78083000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:78081800-78083200	Active TSS	Sigmoid Colon	Sigmoid Colon
41	chr14:78081800-78083200	Active TSS	Small Intestine	intestine
42	chr14:78081800-78083400	Active TSS	Primary monocytes fromperipheralblood	blood
43	chr14:78081800-78083400	Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr14:78081800-78083400	Active TSS	NH-A	brain
45	chr14:78081800-78083600	Active TSS	H1 Cell Line	embryonic stem cell
46	chr14:78081800-78083600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:78081800-78083600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr14:78081800-78083600	Active TSS	HSMM	muscle
49	chr14:78081800-78083600	Active TSS	Osteobl	bone
50	chr14:78082000-78082600	Flanking Active TSS	Primary T cells fromperipheralblood	blood

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