Variant report

Variant	rs17692355
Chromosome Location	chr9:26548877-26548878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10429490	0.94[AFR][1000 genomes]
rs10429492	0.94[AFR][1000 genomes]
rs12337967	0.96[ASN][1000 genomes]
rs17754132	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60210929	0.87[ASN][1000 genomes]
rs62544418	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2755419	chr9:26539976-26576337	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv520604	chr9:26546080-26551726	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26548000-26549000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:26548000-26550000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:26548000-26550200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:26548200-26550000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:26548400-26549000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr9:26548600-26552400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:26548800-26549000	Enhancers	Aorta	Aorta
8	chr9:26548800-26549400	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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