Variant report

Variant	rs17692606
Chromosome Location	chr6:73350307-73350308
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17692055	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17748888	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17748966	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56897294	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57822223	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58599475	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58816739	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60412240	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60620751	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6938189	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73531872	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73533641	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73533649	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73533670	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73533685	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73535764	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73535765	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73535768	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73535770	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73535771	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73333800-73350800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:73334400-73358800	Weak transcription	HSMM	muscle
3	chr6:73334600-73356200	Weak transcription	HMEC	breast
4	chr6:73336200-73359000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:73336200-73362800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73337400-73356200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:73338600-73358600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:73343400-73351000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:73346800-73358800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:73347400-73351000	Weak transcription	GM12878-XiMat	blood
11	chr6:73349400-73354000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:73349400-73354800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:73350000-73354800	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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