Variant report

Variant	rs17692670
Chromosome Location	chr9:26603896-26603897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17692544	1.00[ASN][1000 genomes]
rs17760378	1.00[ASW][hapmap]
rs1926748	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1926780	0.89[ASN][1000 genomes]
rs1926783	1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1977417	0.89[ASN][1000 genomes]
rs7849701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7867714	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv892857	chr9:26593785-26633841	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv6508	chr9:26602437-26647117	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26598000-26604200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:26602600-26604800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:26602800-26604400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr9:26602800-26604600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:26602800-26604600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:26603000-26604200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:26603000-26604600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:26603000-26604600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:26603000-26604600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:26603000-26604600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:26603000-26604600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:26603200-26604000	Enhancers	Fetal Lung	lung
13	chr9:26603200-26604200	Enhancers	Fetal Brain Female	brain
14	chr9:26603200-26604600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr9:26603200-26604600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:26603200-26605400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:26603400-26604600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:26603600-26604000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:26603600-26604600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr9:26603800-26604200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:26603800-26604600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links