Variant report

Variant	rs17700265
Chromosome Location	chr19:55711543-55711544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:55703436..55706560-chr19:55709695..55713857,3	K562	blood:
2	chr19:55711425..55714079-chr19:55726624..55728744,2	K562	blood:
3	chr19:55710077..55713946-chr19:55715041..55719503,7	K562	blood:
4	chr19:55691908..55694093-chr19:55710384..55713231,2	K562	blood:
5	chr19:55703531..55706099-chr19:55709723..55712507,2	K562	blood:
6	chr19:55708300..55709825-chr19:55709911..55711618,2	K562	blood:

Variant related genes	Relation type
ENSG00000267649	Chromatin interaction
ENSG00000080031	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1042506	1.00[JPT][hapmap]
rs11672373	1.00[JPT][hapmap]
rs4252567	1.00[JPT][hapmap]
rs4252568	1.00[JPT][hapmap]
rs73066689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55691200-55718200	Weak transcription	Right Atrium	heart
2	chr19:55691600-55718200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:55691800-55717600	Strong transcription	Fetal Intestine Small	intestine
4	chr19:55692600-55717000	Strong transcription	Duodenum Mucosa	Duodenum
5	chr19:55701200-55718000	Weak transcription	A549	lung
6	chr19:55701400-55711600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:55701400-55718400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:55702600-55714800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr19:55702800-55713400	Weak transcription	Small Intestine	intestine
10	chr19:55703000-55717800	Weak transcription	Hela-S3	cervix
11	chr19:55704200-55718200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr19:55704800-55717400	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr19:55705000-55714200	Strong transcription	HepG2	liver
14	chr19:55705000-55717000	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr19:55707000-55713600	Strong transcription	Fetal Intestine Large	intestine
16	chr19:55707200-55718400	Weak transcription	Brain Angular Gyrus	brain
17	chr19:55707800-55713800	Strong transcription	K562	blood
18	chr19:55707800-55715600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr19:55707800-55717200	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr19:55708000-55713000	Strong transcription	Fetal Stomach	stomach
21	chr19:55708800-55720600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr19:55709400-55715800	Weak transcription	Spleen	Spleen
23	chr19:55709600-55713800	Strong transcription	Gastric	stomach
24	chr19:55710200-55712000	Strong transcription	Colonic Mucosa	Colon
25	chr19:55710400-55718200	Weak transcription	Stomach Mucosa	stomach
26	chr19:55710800-55711600	Weak transcription	Pancreas	Pancrea
27	chr19:55711400-55711800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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