Variant report

Variant	rs17700888
Chromosome Location	chr3:162004108-162004109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1387013	1.00[ASN][1000 genomes]
rs2405563	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67618135	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154074	1.00[ASN][1000 genomes]
rs73154087	1.00[ASN][1000 genomes]
rs73154088	1.00[ASN][1000 genomes]
rs73155807	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2751981	chr3:161863459-162016298	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162003200-162004200	Enhancers	Osteobl	bone
2	chr3:162003200-162004400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:162003400-162004800	Enhancers	Dnd41	blood
4	chr3:162003400-162005400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:162003400-162013200	Weak transcription	Aorta	Aorta
6	chr3:162003600-162004400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:162003600-162004400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr3:162003600-162004400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:162003600-162004400	Enhancers	A549	lung
10	chr3:162003800-162004400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:162004000-162004400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:162004000-162004400	Enhancers	Fetal Brain Male	brain
13	chr3:162004000-162004400	Enhancers	Fetal Heart	heart
14	chr3:162004000-162004400	Enhancers	Psoas Muscle	Psoas
15	chr3:162004000-162004400	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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