Variant report

Variant	rs17701634
Chromosome Location	chr21:16727317-16727318
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17774799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421971	1.00[EUR][1000 genomes]
rs57201378	1.00[EUR][1000 genomes]
rs7280783	1.00[ASN][1000 genomes]
rs8132091	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1812556	chr21:16690063-16736368	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16725200-16738200	Weak transcription	HepG2	liver
2	chr21:16725600-16728600	Enhancers	HUVEC	blood vessel
3	chr21:16725800-16728000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr21:16726600-16727600	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr21:16726800-16727600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr21:16726800-16727600	Enhancers	Fetal Stomach	stomach
7	chr21:16726800-16727800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr21:16727000-16727800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr21:16727200-16727600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr21:16727200-16727600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr21:16727200-16727800	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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