Variant report

Variant	rs17703528
Chromosome Location	chr11:17523474-17523475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1119618	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16934376	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs17714673	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17715430	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs2073584	1.00[CHB][hapmap]
rs4757538	0.80[EUR][1000 genomes]
rs7107406	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7129919	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs72868496	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs878208	1.00[CHB][hapmap]
rs985575	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17511200-17526000	Weak transcription	Brain Substantia Nigra	brain
2	chr11:17512600-17530000	Weak transcription	Right Atrium	heart
3	chr11:17513600-17530600	Strong transcription	Fetal Intestine Small	intestine
4	chr11:17515000-17523600	Weak transcription	Dnd41	blood
5	chr11:17515600-17524600	Strong transcription	Fetal Intestine Large	intestine
6	chr11:17516800-17529600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:17516800-17553000	Weak transcription	Stomach Mucosa	stomach
8	chr11:17520000-17528600	Weak transcription	Gastric	stomach
9	chr11:17520400-17526000	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:17521400-17529800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:17521800-17529800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:17522600-17531800	Weak transcription	Colonic Mucosa	Colon
13	chr11:17522800-17531200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:17523000-17527600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:17523200-17525600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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