Variant report

Variant	rs17705188
Chromosome Location	chr19:35781316-35781317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12459138	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs417030	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8100218	1.00[ASN][1000 genomes]
rs9916954	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv911618	chr19:35734107-35807845	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	esv1836312	chr19:35741456-35786868	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	n/a
9	nsv512581	chr19:35779561-35781562	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35768400-35781400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:35768800-35781400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:35774800-35809600	Weak transcription	Right Atrium	heart
4	chr19:35775400-35782600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr19:35776200-35781400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr19:35776200-35781400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:35776200-35781600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr19:35776200-35781600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr19:35776200-35784200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:35776200-35786400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr19:35776400-35781400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr19:35778600-35783400	Weak transcription	Fetal Lung	lung
13	chr19:35781000-35782000	Enhancers	Brain Angular Gyrus	brain
14	chr19:35781000-35782000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr19:35781200-35781400	Enhancers	Brain Anterior Caudate	brain
16	chr19:35781200-35781400	Enhancers	Brain Cingulate Gyrus	brain
17	chr19:35781200-35781400	Enhancers	Brain Hippocampus Middle	brain
18	chr19:35781200-35781800	Enhancers	Brain Substantia Nigra	brain
19	chr19:35781200-35781800	Flanking Bivalent TSS/Enh	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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