Variant report

Variant	rs17705854
Chromosome Location	chr19:36114078-36114079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36105395..36107902-chr19:36112782..36114444,2	MCF-7	breast:
2	chr19:36113950..36115512-chr19:36207383..36209122,2	K562	blood:
3	chr19:36113802..36115462-chr19:36138951..36140627,2	MCF-7	breast:
4	chr19:36108017..36111161-chr19:36111625..36115576,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272333	Chromatin interaction
ENSG00000249115	Chromatin interaction
ENSG00000126267	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1262751	1.00[MEX][hapmap]
rs909072	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36104200-36118800	Weak transcription	Left Ventricle	heart
2	chr19:36104200-36119000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr19:36104200-36119000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:36104200-36119000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr19:36104200-36119000	Weak transcription	Colonic Mucosa	Colon
6	chr19:36104200-36119000	Weak transcription	Psoas Muscle	Psoas
7	chr19:36104200-36119000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr19:36104200-36119000	Weak transcription	HSMMtube	muscle
9	chr19:36104200-36119200	Weak transcription	Aorta	Aorta
10	chr19:36104400-36118800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr19:36104400-36118800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr19:36104400-36118800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr19:36104400-36118800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr19:36104400-36119000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr19:36104400-36119000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr19:36104400-36119000	Weak transcription	Colon Smooth Muscle	Colon
17	chr19:36104400-36119000	Weak transcription	Small Intestine	intestine
18	chr19:36104400-36119000	Weak transcription	HSMM	muscle
19	chr19:36104400-36119000	Weak transcription	HUVEC	blood vessel
20	chr19:36104400-36119000	Weak transcription	NHDF-Ad	bronchial
21	chr19:36104400-36119000	Weak transcription	Osteobl	bone
22	chr19:36104400-36119200	Weak transcription	NH-A	brain
23	chr19:36104600-36114200	Strong transcription	Fetal Intestine Small	intestine
24	chr19:36104800-36119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr19:36104800-36119000	Weak transcription	K562	blood
26	chr19:36104800-36119200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr19:36104800-36119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr19:36105000-36114800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr19:36105000-36114800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr19:36105000-36114800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr19:36105000-36114800	Strong transcription	Fetal Muscle Leg	muscle
32	chr19:36105400-36115000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr19:36105600-36114200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr19:36105600-36114400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr19:36105600-36114400	Strong transcription	Thymus	Thymus
36	chr19:36105800-36114400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr19:36105800-36114400	Strong transcription	Brain Germinal Matrix	brain
38	chr19:36107400-36118600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr19:36108000-36119000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr19:36108200-36118600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr19:36108800-36118800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr19:36108800-36119000	Weak transcription	GM12878-XiMat	blood
43	chr19:36108800-36119000	Weak transcription	NHEK	skin
44	chr19:36109200-36119000	Weak transcription	HMEC	breast
45	chr19:36110000-36114400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr19:36110000-36119000	Weak transcription	Right Ventricle	heart
47	chr19:36110200-36119200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr19:36110600-36118800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr19:36111600-36118800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr19:36111800-36118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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