Variant report

Variant	rs17706217
Chromosome Location	chr2:173709907-173709908
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10170449	0.84[EUR][1000 genomes]
rs10174863	0.89[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10180877	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10188641	0.89[EUR][1000 genomes]
rs10194482	0.85[CEU][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs10203199	0.89[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10206361	0.89[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs11682941	0.89[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs11884979	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11885026	0.89[EUR][1000 genomes]
rs17704392	0.89[EUR][1000 genomes]
rs1863169	0.86[EUR][1000 genomes]
rs2113804	0.84[CEU][hapmap]
rs2194720	0.89[CEU][hapmap];0.90[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs3769317	0.85[EUR][1000 genomes]
rs3769318	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs3930351	0.86[EUR][1000 genomes]
rs55740784	0.86[EUR][1000 genomes]
rs62168122	0.89[EUR][1000 genomes]
rs62168124	0.89[EUR][1000 genomes]
rs62168126	0.89[EUR][1000 genomes]
rs7606797	0.89[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17706217	DHRS9	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173689200-173723200	Weak transcription	Esophagus	oesophagus
2	chr2:173700000-173710000	Weak transcription	Psoas Muscle	Psoas
3	chr2:173705800-173714400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:173707200-173710800	Enhancers	Fetal Thymus	thymus
5	chr2:173707400-173714800	Enhancers	Fetal Heart	heart
6	chr2:173707600-173711400	Weak transcription	Aorta	Aorta
7	chr2:173707800-173711400	Weak transcription	Lung	lung
8	chr2:173707800-173712000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:173708200-173713400	Weak transcription	Thymus	Thymus
10	chr2:173708400-173713600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:173708600-173712400	Enhancers	Right Ventricle	heart
12	chr2:173708800-173710200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr2:173708800-173710200	Enhancers	Adipose Nuclei	Adipose
14	chr2:173708800-173710400	Enhancers	Left Ventricle	heart
15	chr2:173708800-173712400	Enhancers	Right Atrium	heart
16	chr2:173708800-173713200	Weak transcription	Fetal Intestine Large	intestine
17	chr2:173709000-173711000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr2:173709000-173711200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr2:173709200-173710200	Weak transcription	Gastric	stomach
20	chr2:173709200-173714200	Weak transcription	NHEK	skin
21	chr2:173709800-173710000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr2:173709800-173710000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:173709800-173710000	Enhancers	Fetal Brain Female	brain
24	chr2:173709800-173710000	Enhancers	Pancreas	Pancrea
25	chr2:173709800-173710200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:173709800-173710400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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