Variant report

Variant	rs17706710
Chromosome Location	chr2:173744658-173744659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10172894	1.00[CHB][hapmap]
rs11895461	1.00[CHB][hapmap]
rs11898565	1.00[CHB][hapmap]
rs17705978	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs3754765	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs41525849	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs56407806	0.83[EUR][1000 genomes]
rs62175777	1.00[ASN][1000 genomes]
rs6752750	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17706710	PLAC8	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173726800-173753600	Weak transcription	Brain Angular Gyrus	brain
2	chr2:173734400-173747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:173742600-173755000	Weak transcription	Left Ventricle	heart
4	chr2:173743000-173748600	Weak transcription	NHEK	skin
5	chr2:173743000-173756400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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