Variant report

Variant	rs177110
Chromosome Location	chr5:17283265-17283266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11740289	0.86[ASN][1000 genomes]
rs298576	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs298581	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv830218	chr5:17093162-17290045	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs177110	FAM105A	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17276600-17283800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:17276600-17285400	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:17277800-17284800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:17277800-17290600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:17278000-17287400	Weak transcription	Hela-S3	cervix
6	chr5:17279400-17284600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:17282400-17283400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:17282400-17283400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:17283000-17283400	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr5:17283000-17284000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:17283000-17284000	Weak transcription	A549	lung
12	chr5:17283200-17283400	Enhancers	GM12878-XiMat	blood
13	chr5:17283200-17284200	Enhancers	Primary B cells from cord blood	blood
14	chr5:17283200-17290200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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