Variant report
| Variant | rs177146 |
|---|---|
| Chromosome Location | chr14:78584703-78584704 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs177145 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs177147 | 0.94[AFR][1000 genomes] |
| rs177152 | 0.95[AFR][1000 genomes] |
| rs177155 | 0.96[AFR][1000 genomes] |
| rs177156 | 0.96[AFR][1000 genomes] |
| rs177160 | 0.96[AFR][1000 genomes] |
| rs177164 | 0.91[AFR][1000 genomes] |
| rs177165 | 0.95[AFR][1000 genomes] |
| rs177169 | 0.92[AFR][1000 genomes] |
| rs177171 | 0.92[AFR][1000 genomes] |
| rs177172 | 0.91[AFR][1000 genomes] |
| rs177173 | 0.92[AFR][1000 genomes] |
| rs177174 | 0.92[AFR][1000 genomes] |
| rs177175 | 0.92[AFR][1000 genomes] |
| rs177176 | 0.92[AFR][1000 genomes] |
| rs177177 | 0.92[AFR][1000 genomes] |
| rs177178 | 0.92[AFR][1000 genomes] |
| rs177179 | 0.92[AFR][1000 genomes] |
| rs177181 | 0.92[AFR][1000 genomes] |
| rs177182 | 0.92[AFR][1000 genomes] |
| rs177183 | 0.92[AFR][1000 genomes] |
| rs177184 | 0.90[AFR][1000 genomes] |
| rs177185 | 0.92[AFR][1000 genomes] |
| rs177187 | 0.92[AFR][1000 genomes] |
| rs370210 | 0.92[AFR][1000 genomes] |
| rs421509 | 0.92[AFR][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs177146 | ACOT6 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78565000-78590200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
