Variant report

Variant	rs177157
Chromosome Location	chr14:78580049-78580050
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs124710	1.00[ASN][1000 genomes]
rs177141	0.96[ASN][1000 genomes]
rs177142	0.96[ASN][1000 genomes]
rs177144	0.93[AFR][1000 genomes]
rs177147	0.98[ASN][1000 genomes]
rs177148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs177150	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs177151	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs177152	0.97[ASN][1000 genomes]
rs177154	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs177155	1.00[ASN][1000 genomes]
rs177156	1.00[ASN][1000 genomes]
rs177160	0.98[ASN][1000 genomes]
rs177162	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs177164	1.00[ASN][1000 genomes]
rs177165	0.96[ASN][1000 genomes]
rs177167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs177169	1.00[ASN][1000 genomes]
rs177171	1.00[ASN][1000 genomes]
rs177172	1.00[ASN][1000 genomes]
rs177173	1.00[ASN][1000 genomes]
rs177174	1.00[ASN][1000 genomes]
rs177175	1.00[ASN][1000 genomes]
rs177176	1.00[ASN][1000 genomes]
rs177177	1.00[ASN][1000 genomes]
rs177178	0.98[ASN][1000 genomes]
rs177179	1.00[ASN][1000 genomes]
rs177181	1.00[ASN][1000 genomes]
rs177182	1.00[ASN][1000 genomes]
rs177183	1.00[ASN][1000 genomes]
rs177184	1.00[ASN][1000 genomes]
rs177185	1.00[ASN][1000 genomes]
rs177187	1.00[ASN][1000 genomes]
rs177194	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs177195	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs177196	1.00[ASN][1000 genomes]
rs177197	0.81[ASN][1000 genomes]
rs177198	0.99[ASN][1000 genomes]
rs177199	0.93[ASN][1000 genomes]
rs177201	0.87[ASN][1000 genomes]
rs177202	0.83[ASN][1000 genomes]
rs370210	1.00[ASN][1000 genomes]
rs421509	1.00[ASN][1000 genomes]
rs7144032	1.00[ASN][1000 genomes]
rs99298	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs177157	COQ6	cis	cerebellum	SCAN
rs177157	FOS	cis	parietal	SCAN
rs177157	C11orf75	trans	cerebellum	SCAN
rs177157	ENTPD5	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78565000-78590200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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