Variant report

Variant	rs17720593
Chromosome Location	chr9:78810157-78810158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10869729	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11787693	0.88[ASN][1000 genomes]
rs17062197	0.89[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831627	chr9:78651134-78817669	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv893475	chr9:78753324-78817288	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv893476	chr9:78768830-78887992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78790400-78810200	Weak transcription	Brain Angular Gyrus	brain
2	chr9:78790400-78810400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:78790400-78810400	Weak transcription	Brain Anterior Caudate	brain
4	chr9:78790400-78810400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:78790400-78811200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:78790400-78811400	Weak transcription	Fetal Lung	lung
7	chr9:78790400-78811400	Weak transcription	Right Ventricle	heart
8	chr9:78790400-78811600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:78790400-78813200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:78790400-78813600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:78790400-78818000	Weak transcription	Small Intestine	intestine
12	chr9:78794400-78814000	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr9:78796400-78816200	Strong transcription	Fetal Intestine Large	intestine
14	chr9:78796400-78818200	Weak transcription	Fetal Heart	heart
15	chr9:78797000-78811200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:78797000-78812800	Weak transcription	Esophagus	oesophagus
17	chr9:78797000-78820800	Weak transcription	Pancreas	Pancrea
18	chr9:78797200-78810200	Weak transcription	Stomach Mucosa	stomach
19	chr9:78797200-78810800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr9:78797200-78816400	Weak transcription	Fetal Stomach	stomach
21	chr9:78797200-78817000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:78797400-78821400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:78799800-78810400	Weak transcription	Colonic Mucosa	Colon
24	chr9:78801800-78811400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:78803000-78813200	Strong transcription	Primary T cells from cord blood	blood
26	chr9:78803200-78816200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr9:78803400-78810200	Strong transcription	Adipose Nuclei	Adipose
28	chr9:78803400-78814600	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr9:78803600-78810400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr9:78804000-78810400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:78804800-78811000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:78804800-78816000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:78806200-78811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr9:78806600-78811800	Weak transcription	Dnd41	blood
35	chr9:78807000-78810200	Weak transcription	Fetal Intestine Small	intestine
36	chr9:78807200-78812600	Weak transcription	Aorta	Aorta
37	chr9:78807200-78812800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:78807200-78818600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:78807600-78811600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr9:78808000-78810200	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr9:78808200-78813400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr9:78808200-78815400	Weak transcription	Fetal Muscle Leg	muscle
43	chr9:78808800-78810400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr9:78808800-78811400	Weak transcription	Left Ventricle	heart
45	chr9:78808800-78815800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr9:78809000-78810800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr9:78809000-78817800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr9:78809000-78818200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr9:78809000-78818200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr9:78809200-78811800	Weak transcription	Fetal Thymus	thymus

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