Variant report

Variant	rs17721466
Chromosome Location	chr9:78973463-78973464
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13291010	1.00[CEU][hapmap]
rs13292857	1.00[CEU][hapmap]
rs17721472	0.93[EUR][1000 genomes]
rs17777982	0.93[EUR][1000 genomes]
rs71509866	0.96[EUR][1000 genomes]
rs73652928	1.00[EUR][1000 genomes]
rs7850726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78948000-78977800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:78954000-78978000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:78964400-78976200	Strong transcription	Fetal Intestine Large	intestine
4	chr9:78964400-78986400	Weak transcription	Colonic Mucosa	Colon
5	chr9:78967200-78978000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:78969000-78976800	Weak transcription	HepG2	liver
7	chr9:78969200-78977400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:78969200-78988000	Weak transcription	Aorta	Aorta
9	chr9:78969400-78978200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:78970800-78975200	Strong transcription	Duodenum Mucosa	Duodenum
11	chr9:78971400-78975000	Strong transcription	Fetal Intestine Small	intestine
12	chr9:78971400-78979800	Weak transcription	Stomach Mucosa	stomach
13	chr9:78972000-78975200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr9:78972600-78974200	Enhancers	K562	blood
15	chr9:78973400-78974600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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