Variant report

Variant	rs17723808
Chromosome Location	chr8:85341585-85341586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17711687	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17712267	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17785011	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1985489	1.00[YRI][hapmap]
rs2067891	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2761174	chr8:85292571-85342761	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1031918	chr8:85293666-85342749	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85340000-85343600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:85340200-85342000	Enhancers	Fetal Brain Male	brain
3	chr8:85340600-85343600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:85340800-85342200	Enhancers	Fetal Brain Female	brain
5	chr8:85341200-85341800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:85341200-85342000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:85341400-85341600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:85341400-85341800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:85341400-85342000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:85341400-85342000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:85341400-85342000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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