Variant report

Variant	rs17724817
Chromosome Location	chr13:30808908-30808909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10488669	0.87[CEU][hapmap]
rs11618584	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17505148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17505204	0.81[AMR][1000 genomes]
rs17589615	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs17803384	0.85[CEU][hapmap]
rs55938666	0.89[EUR][1000 genomes]
rs61946928	0.81[AMR][1000 genomes]
rs73163470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000819	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30774400-30812600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr13:30791000-30811600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:30791000-30831400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:30796800-30831400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:30797000-30823400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:30797800-30814800	Weak transcription	Placenta	Placenta
7	chr13:30798800-30810800	Strong transcription	Fetal Thymus	thymus
8	chr13:30799200-30811800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:30799200-30831400	Weak transcription	Aorta	Aorta
10	chr13:30799400-30809000	Weak transcription	HSMMtube	muscle
11	chr13:30799400-30812400	Weak transcription	Fetal Kidney	kidney
12	chr13:30799400-30814200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr13:30799400-30814400	Weak transcription	Brain Angular Gyrus	brain
14	chr13:30799400-30814400	Weak transcription	HepG2	liver
15	chr13:30799400-30823200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:30799400-30831600	Weak transcription	Right Ventricle	heart
17	chr13:30799600-30810400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr13:30799600-30817400	Weak transcription	Brain Anterior Caudate	brain
19	chr13:30799600-30823400	Weak transcription	A549	lung
20	chr13:30799600-30823400	Weak transcription	NHEK	skin
21	chr13:30799600-30845200	Weak transcription	HMEC	breast
22	chr13:30799800-30810800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr13:30801000-30821200	Weak transcription	Fetal Brain Male	brain
24	chr13:30801200-30811600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr13:30801200-30812000	Weak transcription	Pancreas	Pancrea
26	chr13:30801200-30815400	Weak transcription	Osteobl	bone
27	chr13:30801800-30815800	Weak transcription	Colon Smooth Muscle	Colon
28	chr13:30803000-30831400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr13:30803400-30827800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr13:30803600-30810600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr13:30803600-30815000	Weak transcription	GM12878-XiMat	blood
32	chr13:30803600-30815400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr13:30803600-30830400	Weak transcription	Fetal Heart	heart
34	chr13:30803600-30831400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr13:30803800-30809200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr13:30803800-30809200	Weak transcription	Fetal Stomach	stomach
37	chr13:30803800-30815800	Weak transcription	Fetal Intestine Small	intestine
38	chr13:30803800-30818000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr13:30803800-30823200	Weak transcription	Fetal Intestine Large	intestine
40	chr13:30804000-30812000	Weak transcription	K562	blood
41	chr13:30804400-30809200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr13:30804400-30809400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr13:30804400-30831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:30804600-30809000	Weak transcription	Fetal Muscle Leg	muscle
45	chr13:30804800-30809400	Weak transcription	HSMM	muscle
46	chr13:30804800-30823400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr13:30805000-30809400	Weak transcription	NHLF	lung
48	chr13:30805400-30809200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr13:30805600-30809000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr13:30805600-30809000	Weak transcription	Fetal Muscle Trunk	muscle

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