Variant report

Variant	rs17726078
Chromosome Location	chr2:172974566-172974567
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172970741..172972520-chr2:172972627..172974795,2	K562	blood:
2	chr2:172751399..172753053-chr2:172972072..172974852,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLX1-1	chr2:172974518-172974710	XLOC_001755

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2016394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357322	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs743605	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518335	chr2:172972971-172974749	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3436324	chr2:172973656-172974704	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172968000-172974800	Weak transcription	Gastric	stomach
2	chr2:172971600-172975200	Bivalent Enhancer	Fetal Thymus	thymus
3	chr2:172971800-172974600	Weak transcription	HMEC	breast
4	chr2:172972600-172974800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:172973000-172978200	Weak transcription	NHDF-Ad	bronchial
6	chr2:172973200-172974600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:172973400-172974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:172973600-172974800	Bivalent Enhancer	HepG2	liver
9	chr2:172973800-172975000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:172974200-172974600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr2:172974200-172974600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
12	chr2:172974200-172974600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
13	chr2:172974200-172974600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:172974200-172974800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:172974200-172975000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:172974200-172975200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:172974200-172975200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:172974400-172974600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr2:172974400-172974600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:172974400-172974600	Enhancers	Brain Germinal Matrix	brain
21	chr2:172974400-172974600	Enhancers	Spleen	Spleen
22	chr2:172974400-172974600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
23	chr2:172974400-172974800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
24	chr2:172974400-172975000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
25	chr2:172974400-172975000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
26	chr2:172974400-172975000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:172974400-172975200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
28	chr2:172974400-172975200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr2:172974400-172975200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
30	chr2:172974400-172975200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
31	chr2:172974400-172975200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
32	chr2:172974400-172975200	Flanking Active TSS	NHEK	skin

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