Variant report

Variant	rs17731499
Chromosome Location	chr5:167764600-167764601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167761098..167764213-chr5:167764568..167768008,3	MCF-7	breast:
2	chr5:167762254..167764626-chr5:167768506..167771343,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1496398	1.00[ASW][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv5119	chr5:167724987-167766076	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1023985	chr5:167756193-168285807	Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv537941	chr5:167756193-168285807	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv969254	chr5:167763191-167771956	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3433059	chr5:167764298-167764802	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167752600-167773000	Weak transcription	Esophagus	oesophagus
2	chr5:167756200-167773000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:167757200-167775200	Weak transcription	Liver	Liver
4	chr5:167757600-167767400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:167758200-167772800	Weak transcription	Fetal Intestine Large	intestine
6	chr5:167758600-167768000	Weak transcription	Gastric	stomach
7	chr5:167759600-167767600	Weak transcription	NHEK	skin
8	chr5:167760000-167764800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:167761600-167768400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:167761800-167765000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:167761800-167765600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:167761800-167766000	Weak transcription	Fetal Lung	lung
13	chr5:167761800-167768000	Weak transcription	NHDF-Ad	bronchial
14	chr5:167761800-167772400	Weak transcription	Fetal Kidney	kidney
15	chr5:167762000-167766400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:167762000-167767800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:167762200-167766200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:167762200-167769200	Weak transcription	Fetal Stomach	stomach
19	chr5:167762200-167791800	Weak transcription	Hela-S3	cervix
20	chr5:167762400-167767800	Weak transcription	HMEC	breast
21	chr5:167762400-167769200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:167762400-167771400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:167762400-167773000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:167762400-167773400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:167762800-167766000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr5:167762800-167766800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:167762800-167770200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:167763000-167765800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr5:167763000-167765800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr5:167763000-167766200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr5:167763000-167768600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr5:167763000-167768800	Weak transcription	Pancreas	Pancrea
33	chr5:167763000-167769000	Weak transcription	Brain Anterior Caudate	brain
34	chr5:167763000-167771000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr5:167763200-167765600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr5:167763200-167766200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:167763200-167766200	Weak transcription	Placenta	Placenta
38	chr5:167763800-167765000	Genic enhancers	A549	lung
39	chr5:167764000-167765000	Enhancers	HepG2	liver
40	chr5:167764400-167764600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr5:167764400-167764800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr5:167764600-167780400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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