Variant report
Variant | rs17734800 |
---|---|
Chromosome Location | chr2:30321103-30321104 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11127257 | 0.98[ASN][1000 genomes] |
rs11127258 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs11688623 | 0.98[ASN][1000 genomes] |
rs11690964 | 0.98[ASN][1000 genomes] |
rs11903016 | 0.98[ASN][1000 genomes] |
rs12620501 | 0.99[ASN][1000 genomes] |
rs12991494 | 0.92[ASN][1000 genomes] |
rs13017699 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs17734815 | 0.98[ASN][1000 genomes] |
rs2276548 | 0.87[ASN][1000 genomes] |
rs2361753 | 0.98[ASN][1000 genomes] |
rs34125526 | 0.94[ASN][1000 genomes] |
rs34350694 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs35466989 | 0.96[ASN][1000 genomes] |
rs35640159 | 0.92[ASN][1000 genomes] |
rs3768667 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs4465805 | 0.98[ASN][1000 genomes] |
rs55869928 | 0.98[ASN][1000 genomes] |
rs62141084 | 0.98[ASN][1000 genomes] |
rs62141087 | 0.93[ASN][1000 genomes] |
rs62141088 | 0.92[ASN][1000 genomes] |
rs6747196 | 0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533886 | chr2:30130019-31068764 | ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:30320200-30321600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |