Variant report

Variant	rs17735714
Chromosome Location	chr18:29783164-29783165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10502583	0.82[CEU][hapmap]
rs12969067	1.00[ASN][1000 genomes]
rs17663067	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs233223	1.00[ASN][1000 genomes]
rs35001736	1.00[ASN][1000 genomes]
rs35117504	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs619294	1.00[ASN][1000 genomes]
rs66693026	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29780600-29783200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr18:29782400-29784600	Weak transcription	Fetal Intestine Large	intestine
3	chr18:29782600-29784600	Weak transcription	Fetal Intestine Small	intestine
4	chr18:29783000-29784600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr18:29783000-29787200	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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