Variant report

Variant	rs17736058
Chromosome Location	chr2:30426554-30426555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10206415	1.00[CHB][hapmap]
rs11681599	1.00[CHB][hapmap]
rs11684717	1.00[CHB][hapmap]
rs11694633	1.00[CHB][hapmap]
rs12476050	1.00[CHB][hapmap]
rs13007792	1.00[CHB][hapmap]
rs17792620	0.82[ASW][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.89[LWK][hapmap];0.81[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1973573	1.00[ASN][1000 genomes]
rs4952117	1.00[ASN][1000 genomes]
rs6708166	1.00[CHB][hapmap]
rs6755863	1.00[CHB][hapmap]
rs906864	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv873768	chr2:30403762-30436249	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30415000-30431400	Weak transcription	Right Atrium	heart
2	chr2:30423800-30431400	Weak transcription	Fetal Stomach	stomach
3	chr2:30424400-30428600	Enhancers	Adipose Nuclei	Adipose
4	chr2:30425200-30426600	Enhancers	Brain Substantia Nigra	brain
5	chr2:30425200-30429600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:30425200-30431400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:30425400-30427800	Weak transcription	Fetal Lung	lung
8	chr2:30425400-30429600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:30425800-30426600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr2:30425800-30426800	Enhancers	Fetal Heart	heart
11	chr2:30426400-30426600	Enhancers	Colon Smooth Muscle	Colon
12	chr2:30426400-30427200	Weak transcription	Left Ventricle	heart
13	chr2:30426400-30427400	Weak transcription	Lung	lung
14	chr2:30426400-30427600	Weak transcription	Ovary	ovary
15	chr2:30426400-30427800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:30426400-30431400	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:30426400-30431400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:30426400-30439800	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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