Variant report

Variant	rs17737826
Chromosome Location	chr10:26106729-26106730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10508705	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11813826	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11818795	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17664916	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55770739	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7084919	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7086549	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7098703	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72783608	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26103800-26108400	Enhancers	Dnd41	blood
2	chr10:26104600-26107200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr10:26104600-26108000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:26104800-26108400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:26105000-26107000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:26105000-26108000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:26105200-26108400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:26105600-26106800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:26105600-26107000	Enhancers	NH-A	brain
10	chr10:26105800-26107200	Enhancers	Brain Germinal Matrix	brain
11	chr10:26106200-26107400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:26106200-26108400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:26106200-26116400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:26106600-26106800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:26106600-26106800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:26106600-26107000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:26106600-26108200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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