Variant report

Variant	rs17747572
Chromosome Location	chr5:75589021-75589022
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10805900	1.00[YRI][hapmap]
rs3733860	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75585000-75593400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:75585000-75596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:75586200-75592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:75586400-75590000	Enhancers	Stomach Mucosa	stomach
5	chr5:75586400-75591400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:75587200-75589600	Weak transcription	Fetal Thymus	thymus
7	chr5:75587400-75592200	Weak transcription	Liver	Liver
8	chr5:75587800-75589600	Enhancers	Duodenum Mucosa	Duodenum
9	chr5:75587800-75591800	Enhancers	Primary hematopoietic stem cells	blood
10	chr5:75588000-75589800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr5:75588200-75589800	Enhancers	Primary B cells from peripheral blood	blood
12	chr5:75588200-75599800	Weak transcription	Pancreas	Pancrea
13	chr5:75588400-75599800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:75588600-75589800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:75588800-75589200	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr5:75588800-75589600	Enhancers	Small Intestine	intestine
17	chr5:75588800-75590000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:75589000-75589200	Flanking Active TSS	GM12878-XiMat	blood
19	chr5:75589000-75593400	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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