Variant report

Variant	rs17748121
Chromosome Location	chr7:66399510-66399511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:66392066..66395575-chr7:66397284..66400489,4	K562	blood:
2	chr7:66390822..66393566-chr7:66398113..66400067,2	K562	blood:
3	chr7:66398427..66400092-chr7:66416585..66419096,2	K562	blood:
4	chr7:66391341..66394303-chr7:66398418..66401145,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10950054	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10950055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11762354	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11766583	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12668022	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12673366	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17747939	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17748198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35244862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3735155	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4718429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4718433	1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap]
rs6960230	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6974046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387600-66407200	Weak transcription	NH-A	brain
2	chr7:66387600-66409800	Weak transcription	Fetal Kidney	kidney
3	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:66388200-66406800	Weak transcription	NHLF	lung
5	chr7:66388400-66401200	Weak transcription	Fetal Lung	lung
6	chr7:66388400-66406800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:66388400-66406800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:66388600-66403600	Weak transcription	HUVEC	blood vessel
9	chr7:66388600-66403800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:66388600-66406800	Weak transcription	NHDF-Ad	bronchial
11	chr7:66389000-66406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:66389400-66405400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:66390600-66403800	Weak transcription	HSMM	muscle
14	chr7:66391200-66409800	Weak transcription	Brain Germinal Matrix	brain
15	chr7:66392600-66403400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr7:66393000-66399800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:66393000-66402400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:66393000-66403600	Weak transcription	HepG2	liver
19	chr7:66393000-66406600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:66393400-66411800	Weak transcription	Stomach Mucosa	stomach
21	chr7:66393800-66422200	Weak transcription	Fetal Heart	heart
22	chr7:66394000-66403600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:66394200-66402000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:66394200-66403800	Weak transcription	Hela-S3	cervix
25	chr7:66394200-66405400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:66394200-66408000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:66394400-66405400	Weak transcription	HMEC	breast
28	chr7:66394400-66405600	Weak transcription	Colonic Mucosa	Colon
29	chr7:66395000-66404000	Weak transcription	NHEK	skin
30	chr7:66395400-66404000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:66395400-66406800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:66395400-66406800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr7:66395600-66402400	Weak transcription	Dnd41	blood
34	chr7:66395600-66403600	Weak transcription	A549	lung
35	chr7:66395600-66404600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:66395600-66405400	Weak transcription	Right Atrium	heart
37	chr7:66395600-66407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr7:66395800-66400400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:66395800-66400400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:66395800-66404000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:66395800-66405400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr7:66395800-66406400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:66395800-66406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:66395800-66406800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:66395800-66406800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:66395800-66408000	Weak transcription	Esophagus	oesophagus
47	chr7:66395800-66412800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr7:66396000-66400400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr7:66396000-66400400	Weak transcription	Fetal Stomach	stomach
50	chr7:66396000-66401600	Weak transcription	Fetal Intestine Large	intestine

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