Variant report
Variant | rs17750208 |
---|---|
Chromosome Location | chr16:10092002-10092003 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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rs_ID | r2[population] |
---|---|
rs10500370 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10500371 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10500372 | 0.87[ASW][hapmap];0.83[CEU][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes] |
rs10500373 | 0.87[ASW][hapmap];0.94[CEU][hapmap];0.81[CHD][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1213316 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap] |
rs1213319 | 0.81[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap] |
rs12447252 | 0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12598055 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12598112 | 0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12599024 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs17682922 | 0.87[ASW][hapmap];0.94[CEU][hapmap];0.81[CHD][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs17682940 | 0.87[ASW][hapmap];0.83[CEU][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes] |
rs17750303 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2650424 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2650431 | 0.82[JPT][hapmap] |
rs2650434 | 0.81[CEU][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap] |
rs2729593 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs3859123 | 0.82[JPT][hapmap] |
rs3859125 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs3859126 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs3913375 | 0.81[CEU][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs4363863 | 0.87[ASW][hapmap];0.94[CEU][hapmap];0.81[CHD][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs9788936 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9788939 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949196 | chr16:9937980-10182349 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1037001 | chr16:10008023-10476482 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | esv2422500 | chr16:10008309-10415517 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1045882 | chr16:10025402-10117992 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv1052566 | chr16:10033178-10260068 | Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | esv2758410 | chr16:10060976-10257550 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | esv2758629 | chr16:10060976-10257550 | Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
8 | nsv427973 | chr16:10060976-10257550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv1037707 | chr16:10078790-10529893 | Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
10 | nsv1042727 | chr16:10092002-10521096 | Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:10090600-10095800 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |