Variant report

Variant	rs17752568
Chromosome Location	chr7:149366013-149366014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:149365654..149368129-chr7:149438510..149441107,2	K562	blood:
2	chr7:149365972..149366497-chr7:149450810..149451319,2	MCF-7	breast:
3	chr7:149363871..149368129-chr7:149438510..149443651,4	K562	blood:
4	chr7:149365969..149367461-chr7:149400661..149402036,7	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11970808	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666315	0.88[EUR][1000 genomes]
rs12670973	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12671012	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12672127	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371119	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371120	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1439098	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1439099	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1595613	0.86[EUR][1000 genomes]
rs56989772	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57648598	0.84[EUR][1000 genomes]
rs57697678	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58440295	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60397053	0.84[EUR][1000 genomes]
rs60571819	0.84[EUR][1000 genomes]
rs60735114	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61213107	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6974082	0.84[EUR][1000 genomes]
rs73475633	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73475635	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73475637	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73475638	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73475640	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73475645	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021849	chr7:149230929-149422239	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149360200-149370400	Weak transcription	Placenta	Placenta
2	chr7:149364000-149367000	Weak transcription	Fetal Muscle Leg	muscle

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