Variant report

Variant	rs17753066
Chromosome Location	chr2:76396057-76396058
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:76392889..76395299-chr2:76395591..76397638,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12469625	0.90[EUR][1000 genomes]
rs12478096	0.86[EUR][1000 genomes]
rs12993689	0.85[EUR][1000 genomes]
rs12994139	0.85[EUR][1000 genomes]
rs12994329	0.85[EUR][1000 genomes]
rs12994438	0.86[EUR][1000 genomes]
rs12999290	0.85[EUR][1000 genomes]
rs13011354	0.85[EUR][1000 genomes]
rs13013176	0.86[EUR][1000 genomes]
rs13020068	0.86[EUR][1000 genomes]
rs13025684	0.96[EUR][1000 genomes]
rs2119424	0.85[EUR][1000 genomes]
rs317289	0.84[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs317292	0.84[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs317293	0.86[EUR][1000 genomes]
rs317294	0.85[EUR][1000 genomes]
rs317295	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34444448	0.86[EUR][1000 genomes]
rs34626009	0.86[EUR][1000 genomes]
rs34801096	0.86[EUR][1000 genomes]
rs34927938	0.86[EUR][1000 genomes]
rs34943341	0.83[EUR][1000 genomes]
rs34988525	0.83[EUR][1000 genomes]
rs35166262	0.87[EUR][1000 genomes]
rs35191290	0.85[EUR][1000 genomes]
rs35203643	0.86[EUR][1000 genomes]
rs35604495	0.87[EUR][1000 genomes]
rs35721862	0.86[EUR][1000 genomes]
rs35840632	0.86[EUR][1000 genomes]
rs367630	0.82[EUR][1000 genomes]
rs370564	0.82[EUR][1000 genomes]
rs395903	0.82[EUR][1000 genomes]
rs406952	0.82[EUR][1000 genomes]
rs411150	0.83[EUR][1000 genomes]
rs424751	0.82[EUR][1000 genomes]
rs436067	0.82[EUR][1000 genomes]
rs443569	0.83[EUR][1000 genomes]
rs443713	0.83[EUR][1000 genomes]
rs451469	0.82[EUR][1000 genomes]
rs4572619	0.85[EUR][1000 genomes]
rs59225353	0.85[EUR][1000 genomes]
rs62165097	0.85[EUR][1000 genomes]
rs62166233	0.85[EUR][1000 genomes]
rs62166234	0.86[EUR][1000 genomes]
rs66469242	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67017218	0.86[EUR][1000 genomes]
rs6722749	0.86[EUR][1000 genomes]
rs6744439	0.83[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs6744983	0.84[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs67509175	0.85[EUR][1000 genomes]
rs67699033	0.85[EUR][1000 genomes]
rs71391729	0.86[EUR][1000 genomes]
rs730148	0.86[EUR][1000 genomes]
rs730149	0.86[EUR][1000 genomes]
rs7582596	0.86[EUR][1000 genomes]
rs7585603	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv874311	chr2:76389455-76492999	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76394000-76397400	Weak transcription	HepG2	liver
2	chr2:76395800-76396200	Enhancers	K562	blood
3	chr2:76395800-76396800	Weak transcription	Fetal Brain Male	brain

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