Variant report

Variant	rs17753630
Chromosome Location	chr8:118727945-118727946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10505320	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10505322	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1355060	0.95[ASN][1000 genomes]
rs1508564	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16890109	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16890111	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16890116	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16890119	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16890122	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17753209	1.00[AFR][1000 genomes]
rs17753221	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17753372	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17815416	1.00[AFR][1000 genomes]
rs17815428	0.89[AMR][1000 genomes]
rs17815523	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17815657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17815776	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136106	0.86[CHB][hapmap]
rs4490876	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831438	chr8:118679896-118823600	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv891410	chr8:118684994-118730344	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118710400-118737200	Weak transcription	Aorta	Aorta
2	chr8:118725600-118730600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:118726200-118728000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:118726200-118729800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:118726200-118730400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:118726200-118730800	Weak transcription	NHLF	lung
7	chr8:118726200-118730800	Weak transcription	Osteobl	bone
8	chr8:118726200-118731200	Weak transcription	NHDF-Ad	bronchial
9	chr8:118726200-118731600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:118726400-118730200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:118726400-118730600	Weak transcription	Right Atrium	heart
12	chr8:118726400-118731000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:118726400-118742400	Weak transcription	HSMM	muscle
14	chr8:118727200-118728000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:118727200-118728200	Enhancers	Fetal Lung	lung
16	chr8:118727400-118728000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr8:118727400-118728200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:118727400-118728200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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