Variant report

Variant	rs17755381
Chromosome Location	chr4:7282506-7282507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7281415..7283268-chr4:7284765..7287667,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10004527	1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs10007491	0.84[EUR][1000 genomes]
rs6814708	1.00[CHB][hapmap]
rs6824726	0.88[CHB][hapmap]
rs6831668	0.86[CHB][hapmap]
rs6840893	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856962	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs6857447	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858286	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv829850	chr4:7112509-7314016	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv432556	chr4:7174993-7391948	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv878541	chr4:7211197-7341243	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv461200	chr4:7256620-7297506	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv593567	chr4:7256620-7297506	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv461201	chr4:7256620-7311399	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv593568	chr4:7256620-7311399	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv878543	chr4:7282506-7353052	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7277600-7282600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:7278400-7283000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:7278600-7283600	Weak transcription	Lung	lung
4	chr4:7278600-7285000	Enhancers	Fetal Brain Male	brain
5	chr4:7278800-7283000	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:7278800-7284200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:7278800-7292800	Weak transcription	Right Atrium	heart
8	chr4:7279200-7289400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:7280200-7282800	Enhancers	Fetal Muscle Leg	muscle
10	chr4:7280400-7283000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:7280800-7283400	Enhancers	Fetal Stomach	stomach
12	chr4:7281000-7284600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:7281200-7282600	Enhancers	NHEK	skin
14	chr4:7281200-7284000	Enhancers	HMEC	breast
15	chr4:7281200-7284400	Enhancers	NH-A	brain
16	chr4:7281400-7282600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:7281400-7282600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:7281400-7283400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:7281400-7283400	Enhancers	HSMMtube	muscle
20	chr4:7281400-7284200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:7281400-7284600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:7281400-7293200	Weak transcription	Ovary	ovary
23	chr4:7281600-7283200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:7281600-7283400	Enhancers	HSMM	muscle
25	chr4:7281600-7284000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:7281800-7283400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:7282000-7283400	Weak transcription	Brain Angular Gyrus	brain
28	chr4:7282000-7285200	Enhancers	Fetal Brain Female	brain
29	chr4:7282000-7289800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:7282200-7283200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:7282200-7283800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:7282200-7284400	Enhancers	Fetal Lung	lung
33	chr4:7282200-7285200	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr4:7282400-7283200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr4:7282400-7283200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr4:7282400-7284000	Enhancers	Brain Anterior Caudate	brain
37	chr4:7282400-7284600	Enhancers	Brain Substantia Nigra	brain

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