Variant report

Variant	rs17756782
Chromosome Location	chr14:69125795-69125796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69125254..69128271-chr14:69281181..69284141,4	MCF-7	breast:
2	chr14:69125471..69127049-chr14:69139914..69141756,2	K562	blood:
3	chr14:69125055..69127745-chr14:69178305..69180249,2	MCF-7	breast:
4	chr14:69104267..69107230-chr14:69123816..69125821,2	MCF-7	breast:
5	chr14:69094966..69097312-chr14:69124853..69127444,3	MCF-7	breast:
6	chr14:69124488..69126263-chr14:69245986..69248780,2	MCF-7	breast:
7	chr14:68716374..68719235-chr14:69124469..69126637,2	MCF-7	breast:
8	chr14:68933809..68936461-chr14:69124608..69126436,2	MCF-7	breast:
9	chr14:69125365..69129113-chr14:69131189..69133426,4	MCF-7	breast:
10	chr14:68935583..68937127-chr14:69124906..69126838,2	MCF-7	breast:
11	chr14:69123995..69127271-chr14:69134503..69138047,3	MCF-7	breast:
12	chr14:69116897..69119206-chr14:69123496..69125960,2	MCF-7	breast:
13	chr14:69122826..69132436-chr14:69256721..69264610,21	MCF-7	breast:
14	chr14:69125612..69128109-chr14:69250025..69252097,2	MCF-7	breast:
15	chr14:69125361..69129179-chr14:69259239..69263742,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10483817	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10483818	0.89[YRI][hapmap]
rs12433279	0.90[YRI][hapmap]
rs12435141	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs12435831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12437314	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12890882	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs4902627	0.90[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7141529	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7350738	0.97[ASN][1000 genomes]
rs8006682	0.90[CEU][hapmap];0.93[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8016988	0.94[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
2	chr14:69119000-69125800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:69120800-69126800	Enhancers	Fetal Lung	lung
4	chr14:69120800-69127000	Enhancers	Fetal Thymus	thymus
5	chr14:69120800-69139800	Enhancers	Fetal Muscle Leg	muscle
6	chr14:69121000-69125800	Enhancers	Fetal Muscle Trunk	muscle
7	chr14:69121200-69129400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr14:69122000-69125800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:69122000-69127400	Weak transcription	GM12878-XiMat	blood
10	chr14:69122000-69136000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:69122200-69131200	Weak transcription	Small Intestine	intestine
12	chr14:69122600-69129600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:69122800-69128400	Weak transcription	Right Ventricle	heart
14	chr14:69122800-69133600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:69122800-69133800	Weak transcription	Primary B cells from cord blood	blood
16	chr14:69123000-69125800	Weak transcription	Fetal Brain Female	brain
17	chr14:69123000-69129600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:69123000-69130600	Weak transcription	Liver	Liver
19	chr14:69123000-69137800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:69123200-69131000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:69123800-69130400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr14:69124400-69128200	Enhancers	Ovary	ovary
23	chr14:69124600-69126000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:69124600-69126000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:69124600-69126800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:69124600-69126800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:69124600-69128000	Enhancers	Lung	lung
28	chr14:69124600-69130200	Enhancers	Placenta	Placenta
29	chr14:69124800-69126600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr14:69124800-69131800	Enhancers	Spleen	Spleen
31	chr14:69125000-69125800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:69125000-69126000	Enhancers	Brain Substantia Nigra	brain
33	chr14:69125000-69126200	Enhancers	Brain Hippocampus Middle	brain
34	chr14:69125000-69126400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:69125000-69126400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
36	chr14:69125000-69126600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:69125000-69126600	Enhancers	Gastric	stomach
38	chr14:69125000-69126800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:69125000-69126800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:69125000-69126800	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr14:69125000-69126800	Enhancers	Esophagus	oesophagus
42	chr14:69125000-69126800	Enhancers	Fetal Intestine Large	intestine
43	chr14:69125000-69126800	Enhancers	Right Atrium	heart
44	chr14:69125000-69127400	Enhancers	Rectal Smooth Muscle	rectum
45	chr14:69125200-69126200	Enhancers	HSMMtube	muscle
46	chr14:69125200-69126400	Enhancers	Fetal Heart	heart
47	chr14:69125200-69126400	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr14:69125200-69126600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:69125200-69126600	Enhancers	Brain Anterior Caudate	brain
50	chr14:69125200-69126600	Enhancers	Skeletal Muscle Male	skeletal muscle

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