Variant report

Variant	rs17756800
Chromosome Location	chr14:69127385-69127386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69125254..69128271-chr14:69281181..69284141,4	MCF-7	breast:
2	chr14:69125055..69127745-chr14:69178305..69180249,2	MCF-7	breast:
3	chr14:69094966..69097312-chr14:69124853..69127444,3	MCF-7	breast:
4	chr14:69125365..69129113-chr14:69131189..69133426,4	MCF-7	breast:
5	chr14:69122826..69132436-chr14:69256721..69264610,21	MCF-7	breast:
6	chr14:68865781..68868150-chr14:69125911..69128521,2	MCF-7	breast:
7	chr14:69126667..69128513-chr14:69248793..69251052,2	MCF-7	breast:
8	chr14:69125612..69128109-chr14:69250025..69252097,2	MCF-7	breast:
9	chr14:69125361..69129179-chr14:69259239..69263742,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10150973	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106094	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17106118	0.97[ASN][1000 genomes]
rs2024945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
2	chr14:69120800-69139800	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69121200-69129400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr14:69122000-69127400	Weak transcription	GM12878-XiMat	blood
5	chr14:69122000-69136000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:69122200-69131200	Weak transcription	Small Intestine	intestine
7	chr14:69122600-69129600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:69122800-69128400	Weak transcription	Right Ventricle	heart
9	chr14:69122800-69133600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:69122800-69133800	Weak transcription	Primary B cells from cord blood	blood
11	chr14:69123000-69129600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:69123000-69130600	Weak transcription	Liver	Liver
13	chr14:69123000-69137800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:69123200-69131000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:69123800-69130400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr14:69124400-69128200	Enhancers	Ovary	ovary
17	chr14:69124600-69128000	Enhancers	Lung	lung
18	chr14:69124600-69130200	Enhancers	Placenta	Placenta
19	chr14:69124800-69131800	Enhancers	Spleen	Spleen
20	chr14:69125000-69127400	Enhancers	Rectal Smooth Muscle	rectum
21	chr14:69125200-69127400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:69125600-69127800	Enhancers	Left Ventricle	heart
23	chr14:69125600-69128600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr14:69126000-69127400	Enhancers	Fetal Muscle Trunk	muscle
25	chr14:69126000-69127800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:69126000-69130000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:69126200-69128000	Weak transcription	HSMMtube	muscle
28	chr14:69126400-69128000	Weak transcription	Fetal Heart	heart
29	chr14:69126400-69128000	Enhancers	Stomach Smooth Muscle	stomach
30	chr14:69126400-69128400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr14:69126400-69129400	Weak transcription	NH-A	brain
32	chr14:69126400-69129400	Weak transcription	Osteobl	bone
33	chr14:69126600-69127600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:69126600-69128800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:69126600-69129200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:69126600-69129200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr14:69126600-69129200	Weak transcription	Colonic Mucosa	Colon
38	chr14:69126600-69130000	Weak transcription	Adipose Nuclei	Adipose
39	chr14:69126600-69130000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr14:69126600-69130200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:69126600-69130200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr14:69126600-69131000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr14:69126600-69131200	Weak transcription	Brain Anterior Caudate	brain
44	chr14:69126600-69131400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:69126600-69133000	Weak transcription	Gastric	stomach
46	chr14:69126600-69135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:69126600-69136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:69126800-69128200	Weak transcription	HSMM	muscle
49	chr14:69126800-69128400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:69126800-69128400	Weak transcription	Muscle Satellite Cultured Cells	--

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