Variant report

Variant	rs17758796
Chromosome Location	chr14:48006091-48006092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10483568	0.82[EUR][1000 genomes]
rs17684860	0.82[EUR][1000 genomes]
rs72670711	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498118	chr14:47754197-48274409	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv901894	chr14:47975761-48041708	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17758796	MAP4K5	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:48000000-48008000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:48004400-48008400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:48004600-48007000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr14:48005000-48006400	Enhancers	Fetal Brain Female	brain
5	chr14:48005000-48008400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr14:48005000-48008400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr14:48005200-48006400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:48005200-48007600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr14:48005400-48006400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr14:48005400-48008200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:48005600-48007200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr14:48005800-48018800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:48006000-48006200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:48006000-48006600	Weak transcription	Brain Germinal Matrix	brain
15	chr14:48006000-48008200	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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