Variant report

Variant	rs17759357
Chromosome Location	chr9:14373353-14373354
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14371285..14374107-chr9:14389472..14391739,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56237396	1.00[AFR][1000 genomes]
rs72700551	1.00[AFR][1000 genomes]
rs73419610	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892600	chr9:14370172-14469146	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14366200-14391600	Weak transcription	Aorta	Aorta
2	chr9:14371600-14374000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:14371800-14373400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:14371800-14373800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:14371800-14373800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:14371800-14373800	Enhancers	NHDF-Ad	bronchial
7	chr9:14371800-14374000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:14371800-14374000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:14371800-14374000	Enhancers	Fetal Muscle Leg	muscle
10	chr9:14371800-14374000	Enhancers	NHEK	skin
11	chr9:14371800-14374200	Enhancers	HMEC	breast
12	chr9:14372000-14374000	Enhancers	Rectal Smooth Muscle	rectum
13	chr9:14372000-14375200	Enhancers	Fetal Stomach	stomach
14	chr9:14372200-14373400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr9:14372200-14374600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:14372200-14374600	Enhancers	Colon Smooth Muscle	Colon
17	chr9:14372400-14373400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:14372400-14373400	Flanking Active TSS	A549	lung
19	chr9:14372400-14373400	Flanking Active TSS	HUVEC	blood vessel
20	chr9:14372400-14373800	Enhancers	Psoas Muscle	Psoas
21	chr9:14372400-14374000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:14372400-14374000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr9:14372400-14374000	Enhancers	Hela-S3	cervix
24	chr9:14372400-14374000	Enhancers	Osteobl	bone
25	chr9:14372400-14374200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr9:14372600-14373400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr9:14372600-14373400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:14372600-14373400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:14372600-14373400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:14372600-14373400	Enhancers	Adipose Nuclei	Adipose
31	chr9:14372600-14373400	Enhancers	Small Intestine	intestine
32	chr9:14372600-14373400	Enhancers	HSMMtube	muscle
33	chr9:14372600-14373400	Flanking Active TSS	NH-A	brain
34	chr9:14372600-14373600	Enhancers	Stomach Smooth Muscle	stomach
35	chr9:14372600-14373800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:14372600-14373800	Enhancers	Fetal Brain Male	brain
37	chr9:14372600-14374000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr9:14372600-14374000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr9:14372600-14374000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:14372600-14374000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr9:14372600-14374000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:14372600-14374000	Enhancers	Brain Hippocampus Middle	brain
43	chr9:14372600-14374000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr9:14372600-14374000	Enhancers	Fetal Heart	heart
45	chr9:14372600-14374000	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr9:14372600-14374000	Enhancers	HSMM	muscle
47	chr9:14372600-14374000	Enhancers	K562	blood
48	chr9:14372600-14374200	Enhancers	H9 Cell Line	embryonic stem cell
49	chr9:14372600-14374200	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr9:14372600-14374200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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