Variant report

Variant	rs1776192
Chromosome Location	chr1:58577083-58577084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10493244	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1106366	0.90[CEU][hapmap]
rs1106367	0.92[CEU][hapmap]
rs11207168	0.90[CEU][hapmap]
rs11207169	0.90[CEU][hapmap]
rs11207170	0.92[CEU][hapmap]
rs11799299	1.00[CEU][hapmap]
rs11802821	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs12040062	0.83[CEU][hapmap]
rs12042276	0.86[CEU][hapmap]
rs12048970	1.00[CEU][hapmap]
rs12058945	0.92[CEU][hapmap]
rs1213764	0.92[CEU][hapmap]
rs1213770	0.90[CEU][hapmap]
rs1213771	0.92[CEU][hapmap]
rs1320555	0.91[CEU][hapmap]
rs13374932	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs1342875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1359495	0.92[CEU][hapmap]
rs1416341	0.83[CEU][hapmap]
rs1416343	0.92[CEU][hapmap]
rs1416346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116847	0.90[CEU][hapmap]
rs17116867	0.92[CEU][hapmap]
rs17116869	0.92[CEU][hapmap]
rs17116983	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs17116988	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs17117013	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17117039	1.00[CEU][hapmap]
rs17117101	1.00[CEU][hapmap]
rs17117119	0.92[CEU][hapmap]
rs1776184	0.90[CEU][hapmap]
rs1832488	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs1832489	1.00[CEU][hapmap]
rs1953811	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs1992481	0.91[CEU][hapmap]
rs2406591	0.83[CEU][hapmap]
rs2797608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850534	0.86[CEU][hapmap]
rs3850535	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs3861823	0.91[CEU][hapmap]
rs3905539	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs4320799	0.92[CEU][hapmap]
rs7522031	0.92[CEU][hapmap]
rs7551611	1.00[CEU][hapmap]
rs821526	0.82[EUR][1000 genomes]
rs821527	0.90[CEU][hapmap]
rs821528	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs821529	0.90[CEU][hapmap]
rs821530	0.85[CEU][hapmap]
rs873989	0.90[CEU][hapmap]
rs946310	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs9782935	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58576600-58577800	Enhancers	Thymus	Thymus
2	chr1:58576800-58577200	Weak transcription	Fetal Thymus	thymus

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