Variant report

Variant	rs1776440
Chromosome Location	chr6:37557391-37557392
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16889995	1.00[AMR][1000 genomes]
rs1757167	1.00[AMR][1000 genomes]
rs1776450	1.00[AMR][1000 genomes]
rs1891616	1.00[AMR][1000 genomes]
rs2776897	1.00[AMR][1000 genomes]
rs2797776	1.00[AMR][1000 genomes]
rs804844	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37552600-37558600	Enhancers	Fetal Brain Male	brain
2	chr6:37553400-37559400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:37556600-37557600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:37556600-37561800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:37556600-37562000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:37556600-37567600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:37556800-37558400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:37556800-37559200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:37557200-37558000	Enhancers	Fetal Brain Female	brain
10	chr6:37557200-37558200	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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