Variant report

Variant	rs17767394
Chromosome Location	chr12:66636086-66636087
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:66634026..66637031-chr12:66641100..66643733,3	MCF-7	breast:
2	chr12:66633892..66636332-chr12:66637597..66640156,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11176069	0.85[EUR][1000 genomes]
rs11176074	0.85[EUR][1000 genomes]
rs11176075	0.85[EUR][1000 genomes]
rs11465961	1.00[EUR][1000 genomes]
rs11465965	1.00[EUR][1000 genomes]
rs11832980	0.93[EUR][1000 genomes]
rs11836532	0.85[EUR][1000 genomes]
rs12297278	0.85[EUR][1000 genomes]
rs12311209	0.85[EUR][1000 genomes]
rs12312119	0.93[EUR][1000 genomes]
rs17102107	0.85[EUR][1000 genomes]
rs17102243	1.00[EUR][1000 genomes]
rs17180259	0.85[EUR][1000 genomes]
rs1921081	0.85[EUR][1000 genomes]
rs1967338	0.85[EUR][1000 genomes]
rs34557475	0.85[EUR][1000 genomes]
rs56195926	0.93[EUR][1000 genomes]
rs58265032	0.93[EUR][1000 genomes]
rs61209657	0.93[EUR][1000 genomes]
rs61387333	0.85[EUR][1000 genomes]
rs61648127	0.93[EUR][1000 genomes]
rs726302	0.93[EUR][1000 genomes]
rs7307195	0.85[EUR][1000 genomes]
rs73327332	0.93[EUR][1000 genomes]
rs73327334	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv899216	chr12:66563835-66716844	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv541517	chr12:66576953-66639823	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66615600-66643400	Weak transcription	Stomach Mucosa	stomach
2	chr12:66629400-66636200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:66629400-66637200	Weak transcription	Aorta	Aorta
4	chr12:66629400-66639800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:66629400-66639800	Weak transcription	Spleen	Spleen
6	chr12:66629400-66641800	Weak transcription	Esophagus	oesophagus
7	chr12:66629400-66645000	Weak transcription	Right Ventricle	heart
8	chr12:66629400-66645400	Weak transcription	Gastric	stomach
9	chr12:66629600-66639200	Weak transcription	Ovary	ovary
10	chr12:66629600-66643800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr12:66629800-66637400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr12:66629800-66644000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr12:66630000-66637400	Weak transcription	Brain Substantia Nigra	brain
14	chr12:66631000-66637400	Weak transcription	Left Ventricle	heart
15	chr12:66631000-66650000	Weak transcription	Psoas Muscle	Psoas
16	chr12:66631200-66637400	Weak transcription	Right Atrium	heart
17	chr12:66631800-66644800	Weak transcription	GM12878-XiMat	blood
18	chr12:66632000-66644400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:66632400-66641600	Weak transcription	Fetal Muscle Leg	muscle
20	chr12:66633200-66636200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr12:66633200-66636400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr12:66633200-66646400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr12:66633600-66636200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr12:66633600-66637600	Strong transcription	Fetal Lung	lung
25	chr12:66634000-66640200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr12:66634200-66636600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr12:66634200-66638600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:66634400-66637200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr12:66634400-66637400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr12:66634400-66638800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr12:66634400-66645800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr12:66634600-66636200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:66634600-66640000	Weak transcription	Lung	lung
34	chr12:66634600-66641400	Weak transcription	Thymus	Thymus
35	chr12:66634600-66643400	Weak transcription	Fetal Stomach	stomach
36	chr12:66634800-66636400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr12:66634800-66636400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr12:66635000-66636200	Enhancers	NHDF-Ad	bronchial
39	chr12:66635000-66636400	Enhancers	NHLF	lung
40	chr12:66635000-66637200	Enhancers	HSMM	muscle
41	chr12:66635000-66642400	Strong transcription	Primary hematopoietic stem cells	blood
42	chr12:66635200-66636200	Weak transcription	Placenta	Placenta
43	chr12:66635200-66636400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr12:66635200-66636400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr12:66635200-66636400	Enhancers	Osteobl	bone
46	chr12:66635400-66636200	Enhancers	HSMMtube	muscle
47	chr12:66635400-66636400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr12:66635600-66636400	Enhancers	Brain Hippocampus Middle	brain
49	chr12:66635800-66636400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr12:66635800-66636600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links