Variant report

Variant	rs17767466
Chromosome Location	chr14:65252095-65252096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65242147..65244989-chr14:65249995..65252297,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11622171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11622977	0.89[CEU][hapmap]
rs11623956	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17102053	0.83[CEU][hapmap]
rs17180217	0.90[CEU][hapmap]
rs17180350	0.81[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17180497	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17180616	0.83[CEU][hapmap]
rs1875054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2269305	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2269306	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2269307	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2269308	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs229597	0.83[CEU][hapmap]
rs4899144	1.00[CEU][hapmap]
rs4899145	1.00[CEU][hapmap]
rs4902309	1.00[CEU][hapmap]
rs4902310	1.00[CEU][hapmap]
rs4902311	1.00[CEU][hapmap]
rs4902312	1.00[CEU][hapmap]
rs4902313	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4902314	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7141792	0.90[CEU][hapmap]
rs7142689	0.90[CEU][hapmap]
rs7157344	0.89[CEU][hapmap]
rs7157527	0.83[CEU][hapmap]
rs7158780	0.90[CEU][hapmap]
rs747858	1.00[AFR][1000 genomes]
rs911002	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	esv1801406	chr14:65193725-65264416	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65228400-65265000	Weak transcription	Aorta	Aorta
2	chr14:65231600-65261400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65232200-65274200	Weak transcription	Gastric	stomach
4	chr14:65233000-65265600	Weak transcription	Fetal Brain Male	brain
5	chr14:65240400-65262800	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:65242400-65252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:65244800-65272400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:65245200-65257600	Weak transcription	HSMMtube	muscle
9	chr14:65246400-65253200	Weak transcription	Spleen	Spleen
10	chr14:65246800-65252400	Weak transcription	Psoas Muscle	Psoas
11	chr14:65249000-65253000	Strong transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:65249400-65253200	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr14:65250000-65252200	Strong transcription	Fetal Brain Female	brain
14	chr14:65250400-65252800	Strong transcription	Left Ventricle	heart
15	chr14:65250400-65253200	Strong transcription	Fetal Muscle Trunk	muscle
16	chr14:65250400-65271800	Strong transcription	Fetal Muscle Leg	muscle
17	chr14:65251000-65253000	Strong transcription	K562	blood
18	chr14:65251000-65261000	Weak transcription	Brain Angular Gyrus	brain
19	chr14:65251200-65260200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:65251200-65267400	Weak transcription	Fetal Kidney	kidney
21	chr14:65251400-65254200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr14:65251400-65254600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:65251400-65257200	Weak transcription	Right Ventricle	heart
24	chr14:65251400-65257400	Weak transcription	Brain Germinal Matrix	brain
25	chr14:65251400-65259600	Weak transcription	Brain Anterior Caudate	brain
26	chr14:65251600-65264400	Weak transcription	Fetal Heart	heart
27	chr14:65251800-65252600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:65251800-65258000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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