Variant report

Variant	rs1776887
Chromosome Location	chr6:34158143-34158144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34131271..34132268-chr6:34158042..34159125,4	MCF-7	breast:
2	chr6:34156179..34158888-chr6:34205822..34208269,2	K562	blood:

Variant related genes	Relation type
ENSG00000137309	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11969452	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
10	nsv981132	chr6:34150971-34162650	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34147400-34162800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:34151000-34163800	Weak transcription	Right Atrium	heart
3	chr6:34151200-34163800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:34151600-34164200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:34157400-34158600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:34157400-34158800	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:34157400-34158800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:34157600-34158400	Enhancers	Brain Hippocampus Middle	brain
9	chr6:34157600-34158600	Enhancers	Primary B cells from cord blood	blood
10	chr6:34157600-34158600	Enhancers	Fetal Thymus	thymus
11	chr6:34157600-34158800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:34157600-34158800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:34157600-34158800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:34157800-34158200	Enhancers	GM12878-XiMat	blood
15	chr6:34157800-34158400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:34157800-34158400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:34157800-34158400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:34157800-34158400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:34157800-34158400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr6:34157800-34158600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr6:34157800-34158600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:34157800-34158600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:34157800-34158600	Enhancers	K562	blood
24	chr6:34157800-34158800	Enhancers	Thymus	Thymus
25	chr6:34158000-34158600	Enhancers	Placenta	Placenta
26	chr6:34158000-34158600	Bivalent Enhancer	HepG2	liver

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