Variant report

Variant	rs17773268
Chromosome Location	chr10:61298646-61298647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11006549	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11006554	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006556	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61295400-61298800	Enhancers	Fetal Stomach	stomach
2	chr10:61295600-61299600	Enhancers	Fetal Lung	lung
3	chr10:61296400-61299000	Enhancers	Ovary	ovary
4	chr10:61296400-61299200	Enhancers	Fetal Muscle Leg	muscle
5	chr10:61296400-61299200	Enhancers	Stomach Smooth Muscle	stomach
6	chr10:61296800-61298800	Weak transcription	Aorta	Aorta
7	chr10:61297800-61298800	Enhancers	Fetal Muscle Trunk	muscle
8	chr10:61298200-61298800	Weak transcription	Fetal Brain Male	brain
9	chr10:61298400-61299000	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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