Variant report

Variant	rs17776090
Chromosome Location	chr15:43235584-43235585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43234809..43237372-chr15:43248299..43250757,2	K562	blood:
2	chr15:43234709..43237589-chr15:43247590..43250522,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2139656	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43222400-43236600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:43223600-43238400	Weak transcription	Ovary	ovary
3	chr15:43225800-43236000	Weak transcription	HUVEC	blood vessel
4	chr15:43225800-43247600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:43226000-43242200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:43227800-43236800	Weak transcription	Fetal Kidney	kidney
7	chr15:43228200-43236000	Weak transcription	HMEC	breast
8	chr15:43228200-43237200	Weak transcription	NHEK	skin
9	chr15:43228200-43242400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:43229200-43235600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:43229200-43237400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:43229400-43236600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:43229800-43235600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:43229800-43237400	Weak transcription	Brain Germinal Matrix	brain
15	chr15:43230000-43237400	Weak transcription	HSMMtube	muscle
16	chr15:43230200-43236600	Weak transcription	Fetal Brain Female	brain
17	chr15:43230200-43237200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:43230200-43237400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:43230200-43237400	Weak transcription	Thymus	Thymus
20	chr15:43230200-43242400	Weak transcription	NHLF	lung
21	chr15:43230400-43236600	Weak transcription	Osteobl	bone
22	chr15:43230400-43237600	Weak transcription	Lung	lung
23	chr15:43230600-43235600	Weak transcription	Placenta	Placenta
24	chr15:43230600-43236000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:43230600-43236800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr15:43230600-43237400	Weak transcription	Aorta	Aorta
27	chr15:43230600-43238400	Weak transcription	Fetal Intestine Small	intestine
28	chr15:43230800-43237400	Weak transcription	Small Intestine	intestine
29	chr15:43231000-43236000	Weak transcription	Fetal Heart	heart
30	chr15:43231400-43236200	Weak transcription	HSMM	muscle
31	chr15:43231800-43242600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:43232000-43235800	Weak transcription	GM12878-XiMat	blood
33	chr15:43232000-43238200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:43232000-43362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:43232400-43236200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:43232400-43237400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:43232400-43237400	Weak transcription	Fetal Stomach	stomach
38	chr15:43232400-43243400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:43232600-43242200	Weak transcription	Brain Anterior Caudate	brain
40	chr15:43233400-43236400	Weak transcription	HepG2	liver
41	chr15:43233400-43236800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr15:43233600-43236000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:43233800-43235600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:43233800-43235600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr15:43233800-43235600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr15:43233800-43236200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:43233800-43237400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:43234000-43235600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:43234000-43235600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:43234000-43235600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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