Variant report

Variant	rs17781674
Chromosome Location	chr18:44473617-44473618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44468278..44470904-chr18:44471891..44475725,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62095394	1.00[AFR][1000 genomes]
rs998818	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2763189	chr18:44415779-44515384	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833639	chr18:44426363-44552719	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1059378	chr18:44431832-44509052	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv522397	chr18:44451644-44516088	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44468800-44474200	Weak transcription	Gastric	stomach
2	chr18:44469000-44478200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:44469000-44489200	Weak transcription	Fetal Stomach	stomach
4	chr18:44469800-44480400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr18:44469800-44481800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr18:44469800-44493600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr18:44469800-44493800	Weak transcription	Lung	lung
8	chr18:44469800-44494600	Weak transcription	Fetal Brain Male	brain
9	chr18:44469800-44495200	Weak transcription	Hela-S3	cervix
10	chr18:44469800-44495400	Weak transcription	Brain Anterior Caudate	brain
11	chr18:44469800-44496000	Weak transcription	HSMMtube	muscle
12	chr18:44469800-44496400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr18:44470000-44475800	Weak transcription	Osteobl	bone
14	chr18:44470200-44482800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr18:44470200-44484000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:44470400-44486200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr18:44470600-44493000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr18:44470600-44495600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr18:44470800-44479000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr18:44470800-44479200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr18:44470800-44479200	Weak transcription	Colon Smooth Muscle	Colon
22	chr18:44470800-44479400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr18:44470800-44479400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr18:44470800-44479400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr18:44470800-44479600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr18:44470800-44482200	Weak transcription	Aorta	Aorta
27	chr18:44470800-44482800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr18:44470800-44483400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr18:44470800-44483400	Weak transcription	Fetal Brain Female	brain
30	chr18:44470800-44484400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr18:44470800-44486800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr18:44470800-44493200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr18:44470800-44495200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr18:44470800-44495600	Weak transcription	Thymus	Thymus
35	chr18:44470800-44495800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr18:44470800-44495800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr18:44470800-44495800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr18:44471000-44474400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr18:44471000-44475200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr18:44471000-44475400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr18:44471000-44476400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr18:44471000-44477800	Weak transcription	Fetal Intestine Large	intestine
43	chr18:44471000-44478000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr18:44471000-44478600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr18:44471000-44478600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr18:44471000-44478800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr18:44471000-44479200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr18:44471000-44479200	Weak transcription	Primary T cells from cord blood	blood
49	chr18:44471000-44479200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr18:44471000-44479200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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